As a trough moves above a surface, the leading edge is associated with decreasing atmospheric stability, upward motion, and a tightening pressure gradient, which leads to unsettled weather including precipitation, convective storms, and strong winds. As a trough passes, the weather will improve as stability increases in response to warming air aloft, descending air and rising pressure in its wake, and a slackening of the pressure gradient.
The nature of a trough and its surrounding air mass will determine the types and intensities of the weather features found within the trough. Troughs are often associated with frontal systems that will generate a wide variety of aviation weather hazards depending on the time of year and the intensity of the system. If moisture is low and air is warm within the air mass into which a trough is moving, the resulting dry and windy conditions may elevate fire risk. If moisture is plentiful, the lifting along the trough can cause thunderstorm development or heavy precipitation.
This image is an example of a surface frontal that is supported by both a longwave trough at altitude, as well as a shortwave/upper trough aloft, which amplifies surface convergence and divergence aloft, supporting development.
While surface and upper troughs exist at different heights in the atmosphere, they offer most of the same characteristics at both levels. They are responsible for enhanced lift as well as a marked change in wind speed and direction. Because of this, the surface trough acts mainly on altering conditions as they exist on the surface, causing lift from below. However, an upper trough, while it can enhance surface features, causes lift in the mid-atmosphere as well, generating convection and clouds/precipitation based higher in the atmosphere.
Image Source: Environment and Climate Change Canada